Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11649162 chr16:89807131 C/A 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs11649229 chr16:90049589 C/T 1.11E-8 172 25.87 20.2 6.62 KM Plot
PCPG rs11649501 chr16:89850957 A/T 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs11649510 chr16:89851004 A/G 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs11656351 chr17:9489575 A/G 9.69E-6 178 25.17 26.92 24.53 KM Plot
PCPG rs116568909 chr8:11513096 A/G 0.000428 178 25.17 25.87 19.93 KM Plot
PCPG rs11658240 chr17:80484139 A/G 7.94E-7 176 25.77 22.33 8.75 KM Plot
PCPG rs11677736 chr2:239087198 A/T 6.86E-5 178 29.5 18.2 13.27 KM Plot
PCPG rs11679528 chr2:239073506 C/A 4.34E-6 172 29.43 18.2 13.17 KM Plot
PCPG rs11683147 chr2:2743962 T/C 3.49E-5 173 25.6 23.43 21.68 KM Plot
PCPG rs11684892 chr2:121540592 C/G 0.000252 175 25.35 24.23 59.77 KM Plot
PCPG rs116849218 chr12:56683975 C/T 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs11685068 chr2:121541012 C/T 0.000252 175 25.35 24.23 59.77 KM Plot
PCPG rs11685179 chr2:121541075 G/A 0.000214 177 25.53 24.37 59.77 KM Plot
PCPG rs11686291 chr2:2745603 G/A 3.49E-5 173 25.6 23.43 21.68 KM Plot